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People

Present members

    Frédéric Jauffrit (PhD student - Univ. Lyon 1 - 2014-2018) ~ RiboDB database

  • Garcia PS, Jauffrit F, Grangeasse C, Brochier-Armanet C.
    GeneSpy, a user-friendly and flexible genomic context visualizer.
    Bioinformatics (2018); in press. [Abstract]
  • Jauffrit F, Penel S, Delmotte S, Rey C, de Vienne DM, Gouy M, Charrier JP, Flandrois JP, Brochier-Armanet C.
    RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics.
    Mol. Biol. Evol. (2016); 33(8):2170-2172. [Abstract]

Past members

    Monique Aouad (PhD student - Univ. Lyon 1 - 2015-2018) ~ Eukaryogenesis and its links with archaeogenesis

  • Aouad M, Taib N, Oudart A, Lecocq M, Gouy M, Brochier-Armanet C.
    Evolutionary placement of Methanonatronarchaeia.
    Nat Microbiol. (2019); 4(4):558-559. [Abstract]
  • Aouad M, Taib N, Oudart A, Lecocq M, Gouy M, Brochier-Armanet C.
    Extreme halophilic archaea derive from two distinct methanogen Class II lineages.
    Mol Phylogenet Evol. (2018); 127:46-54. [Abstract]

  • Pierre Garcia (PhD student - Univ. Lyon 1 - 2015-2018) ~ Origin and evolution of the cell division machinery in Streptococcus

  • Felix J, Siebert C, Ducassou JN, Nigou J, Garcia PS, Fraudeau A, Huard K, Mas C, Brochier-Armanet C, Couté Y, Gutsche I, Renesto P.
    Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance.
    Sci Rep. (2021); 13;11(1):972. [Abstract]
  • Cohen D, Ghosh S, Shimakawa Y, Ramou N, Garcia PS, Dubois A, Guillot C, Kakwata-Nkor Deluce N, Tilloy V, Durand G, Voegele C, Ndow G, d'Alessandro U, Brochier-Armanet C, Alain S, Le Calvez-Kelm F, Hall J, Zoulim F, Mendy M, Thursz M, Lemoine M, Chemin I.
    Hepatitis B virus preS2Δ38-55 variants: A newly identified risk factor for hepatocellular carcinoma.
    JHEP Rep. (2020); 2(5):100144 [Abstract]
  • Kandiah E, Carriel D, Garcia PS, Felix J, Banzhaf M, Kritikos G, Bacia-Verloop M, Brochier-Armanet C, Elsen S, Gutsche I.
    Structure, Function, and Evolution of the Pseudomonas aeruginosa Lysine Decarboxylase LdcA.
    Structure (2019); 27(12):1842-1854.e4 [Abstract]
  • Garcia PS, Jauffrit F, Grangeasse C, Brochier-Armanet C.
    GeneSpy, a user-friendly and flexible genomic context visualizer.
    Bioinformatics (2019); 35(2):329-331. [Abstract]
  • Zucchini L, Mercy C, Garcia PS, Cluzel C, Gueguen-Chaignon V, Galisson F, Freton C, Guiral S, Brochier-Armanet C, Gouet P, Grangeasse C.
    PASTA repeats of the protein kinase StkP interconnect cell constriction and separation of Streptococcus pneumoniae.
    Nat Microbiol. (2018); 3(2):197-209. [Abstract]
  • Carriel D, Garcia PS, Castelli F, Lamourette P, Fenaille F, Brochier-Armanet C, Elsen S, Gutsche I.
    A novel subfamily of bacterial AAT-fold basic amino acid decarboxylases and functional characterization of its first representative: Pseudomonas aeruginosa LdcA.
    Genome Biol Evol. (2018); in press. [Abstract]
  • Garcia PS, Simorre JP, Brochier-Armanet C, Grangeasse C.
    Cell division of Streptococcus pneumoniae: think positive!
    Curr Opin Microbiol. (2016); 34:18-23. [Abstract]

  • Michel Lecocq (M2 / PhD student - Univ. Lyon 1) since 2013 ~ Evolutionary study of molecular mechanisms involved in adaptation to high temperatures

  • Lecocq M, Groussin M, Gouy M, Brochier-Armanet C.
    The Molecular Determinants of Thermoadaptation: Methanococcales as a Case Study.
    Mol Biol Evol. (in press); x(x):xx-xx [Abstract]
  • Aouad M, Taib N, Oudart A, Lecocq M, Gouy M, Brochier-Armanet C.
    Extreme halophilic archaea derive from two distinct methanogen Class II lineages.
    Mol Phylogenet Evol. (2018); 127:46-54. [Abstract]

Anne Oudart (PhD student - Univ. Lyon 1) since 2014 ~ Ancient metabolisms

  • Aouad M, Taib N, Oudart A, Lecocq M, Gouy M, Brochier-Armanet C.
    Extreme halophilic archaea derive from two distinct methanogen Class II lineages.
    Mol Phylogenet Evol. (2018); 127:46-54. [Abstract]
  • Borland S, Oudart A, Prigent-Combaret C, Brochier-Armanet C, Wisniewski-Dyé F.
    Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum.
    BMC Genomics (2015); 16(1):833. [Abstract]

  • Najwa Taib (Post-doc - Univ. Lyon 1 - 2015-2017) ~ Origin and evolution of atypical lipid biosynthesis pathways

  • Duprey A, Taib N, Leonard S, Garin T, Flandrois JP, Nasser W, Brochier-Armanet C, Reverchon S.
    The phytopathogenic nature of Dickeya aquatica 174/2 and the dynamic early evolution of Dickeya pathogenicity.
    Environ Microbiol. (2019); 21(8):2809-2835. [Abstract]
  • Béthencourt L, Boubakri H, Taib N, Normand P, Armengaud J, Fournier P, Brochier-Armanet C, Herrera-Belaroussi A.
    Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation.
    Mol Phylogenet Evol. (2018); 127:46-54. [Abstract]
  • Aouad M, Taib N, Oudart A, Lecocq M, Gouy M, Brochier-Armanet C.
    Extreme halophilic archaea derive from two distinct methanogen Class II lineages.
    Mol Phylogenet Evol. (2018); 127:46-54. [Abstract]
  • Repizo GD, Viale AM, Borges V, Cameranesi MM, Taib N, Espariz M, Brochier-Armanet C, Gomes JP, Salcedo SP.
    The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen.
    Genome Biol Evol. (2017); 9(9):2292-2307 [Abstract]

  • Mailys Dumet (BTS student - EPL Lyon - 2016) ~ Comparative genomic analysis of the Dickeya bacterial genus

    Lucia Garcia Castro (Undergraduate student - Univ. Lyon 1 - 2016) ~ Genomic analysis of uncultured Frankia strains

    Olivier Imbaud (Undergraduate student - Univ. Lyon 1 - 2016) ~ Genomic analysis of uncultured Frankia strains

    Solène Destandau (Undergraduate student - Univ. Lyon 1 - 2015) ~ Analysis of the Frankia spc operon

    Carine Rey (Undergraduate and M2 student - ENS Lyon - 2013-2015 ~ RiboDB database

  • Jauffrit F, Penel S, Delmotte S, Rey C, de Vienne DM, Gouy M, Charrier JP, Flandrois JP, Brochier-Armanet C.
    RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics.
    Mol. Biol. Evol. (2016); 33(8):2170-2172. [Abstract]

  • Lily Bickerstaffe (M1 student - ENS Lyon - 2014) ~ Evolutionary study of the giant viruses gene repertoires

    Rafael Ponce (M2 student - ENS Lyon - 2013) ~ Evolutionary study of the giant viruses gene repertoires

    Céline Petitjean (PhD student - Univ. Paris XI / Aix-Marseille 1) 2009-2013 ~ Metagenomics of deep ocean archaea (ANR EvolDeep)

  • Petitjean C, Deschamps P, López-García P, Moreira D, Brochier-Armanet C.
    Extending the Conserved Phylogenetic Core of Archaea Disentangles the Evolution of the Third Domain of Life.
    Mol Biol Evol. (2015); 32(5):1242-1254 [Abstract]
  • Petitjean C, Moreira D, López-García P, Brochier-Armanet C.
    Horizontal gene transfer of a chloroplast DnaJ-Fer protein to Thaumarchaeota and the evolutionary history of the DnaK chaperone system in Archaea.
    BMC Evol Biol. (2012); 12(1):22686(1):155-71 [Abstract] [PDF]


  • Marion Dupouy (Undergraduate student - Univ. Lyon 1 - 2013) ~ Origin and Evolution of the genes involved in bioluminescence

    Laura Eme (M2 / PhD student / ATER - Univ. Aix-Marseille 2 - 2006-2011) ~ Origin and Evolution of biological systems and processes involved in the origin of Eucarya

  • Dacks JB, Field MC, Buick R, Eme L, Gribaldo S, Roger AJ, Brochier-Armanet C, Devos DP.
    The changing view of eukaryogenesis - fossils, cells, lineages and how they all come together.
    J Cell Sci. (2016);129(20):3695-3703. [Abstract]
  • Groussin M, Boussau B, Szollosi G, Eme L, Gouy M, Brochier-Armanet C, Daubin V.
    Gene acquisitions from bacteria at the origins of major archaeal clades are vastly overestimated.
    Mol. Biol. Evol. (2015); in press [Abstract]
  • Eme L, Reigstad LJ, Spang A, Lanzén A, Weinmaier T, Rattei T, Schleper C, Brochier-Armanet C.
    Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota.
    Res Microbiol (2013); 164(5):425-38 [Abstract]
  • Eme L, Trilles A, Moreira D, Brochier-Armanet C.
    The phylogenomic analysis of the anaphase promoting complex and its targets points to complex and modern-like control of the cell cycle in the last common ancestor of eukaryotes.
    BMC Evol Biol (2011); 11:265 [Abstract] [PDF]
  • Boileau C, Eme L, Brochier-Armanet C, Janicki A, Zhang CC, Latifi A.
    A eukaryotic-like sulfiredoxin involved in oxidative stress responses and in the reduction of the sulfinic form of 2-Cys peroxiredoxin in the cyanobacterium Anabaena PCC 7120.
    New Phytol. (2011); 191(4):1108-18 [Abstract]
  • Eme L, Moreira D, Talla E, Brochier-Armanet C
    A complex cell division machinery was present in the last common ancestor of eukaryotes.
    PLoS ONE. (2009); 4(4):e5021 [Abstract] [PDF]


  • Mélodie Gomez (M2 student - Univ. Aix-Marseille 1 - 2010-2011) ~ Origin of aerobic cellular processes

    Aurélie Trilles (M1 student - Univ. Aix-Marseille 1 - 2009-2010) ~ Evolution of the Anaphase Promoting Complex / Cyclosome

  • Eme L, Trilles A, Moreira D, Brochier-Armanet C.
    The phylogenomic analysis of the anaphase promoting complex and its targets points to complex and modern-like control of the cell cycle in the last common ancestor of eukaryotes.
    BMC Evol Biol (2011); 11:265 [Abstract] [PDF]

  • Hemalatha Golaconda Ramulu (Post-doc CNRS - 2009-2011) ~ Phylogeny and evolution of Proteobacteria

  • Ramulu HG, Groussin M, Talla E, Planel R, Daubin V, Brochier-Armanet C.
    Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?
    Mol Phylogenet Evol. (2014); 75:103-117 [Abstract]

  • Frédéric Dijoux (M2 student - Univ. Aix-Marseille 2 - 2004-2005) ~ Exploration de la diversité de la microfaune de divers milieux aquatiques par des approches d’écologie moléculaire

    Maud Arsac et Audrey Prosper (M2 students - Univ. Lyon1) 2004-2005 ~ Impact de la température sur l'évolution des protéines